Protein Info for AO353_11140 in Pseudomonas fluorescens FW300-N2E3

Annotation: peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1153 transmembrane" amino acids 254 to 273 (20 residues), see Phobius details PF00501: AMP-binding" amino acids 195 to 536 (342 residues), 209.9 bits, see alignment E=1.1e-65 TIGR01733: amino acid adenylation domain" amino acids 215 to 610 (396 residues), 353.5 bits, see alignment E=1.4e-109 PF00550: PP-binding" amino acids 696 to 761 (66 residues), 60.8 bits, see alignment 2.4e-20 TIGR01746: thioester reductase domain" amino acids 797 to 1153 (357 residues), 346.1 bits, see alignment E=2.9e-107 PF01370: Epimerase" amino acids 798 to 988 (191 residues), 36.4 bits, see alignment E=7.6e-13 PF07993: NAD_binding_4" amino acids 800 to 1036 (237 residues), 180 bits, see alignment E=9.8e-57

Best Hits

KEGG orthology group: None (inferred from 77% identity to pfo:Pfl01_0126)

Predicted SEED Role

"Non-ribosomal peptide synthetase modules and related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WHV9 at UniProt or InterPro

Protein Sequence (1153 amino acids)

>AO353_11140 peptide transporter (Pseudomonas fluorescens FW300-N2E3)
MRRLDILLIGQSQALNELALELEQHGHTLTRLSDSHTLSEQPVGNAELLIDDGSLAIPAQ
RLRDQGECAQLSVRLGLGPEDASGLPPIDVLCRYISSGDQRLIARVPVADEASGNGQALL
LRVIAELVDRVALEVSRFSRDAEYFTQAATATPGRHQREESLLTLESLAYAHRLNLNAQP
QLLQLGQIPMIERLEQSFKTFRERPALHIAGEVLSYGDLYARSLAIQQRLLPLIEQHRAV
EGPVVVGICLPKSSALFAGILAILGSGAVYLPLEPSHPLQRQQYILENAGAVLLLHDGQH
PLSDEMPGLDITGIDAREANPCLPLMRLRPGSQAPCMALYTSGTTGHPKGVLLSQNNLGH
FTAWYADYVGLTERSRVLQFSSLSFDSSLIDIFPALIQGAELIVPNDDQRRDPLQLVELI
RHHQLSHAFLPPALLSILPLDQLRDLAHVMTGGDVCEPHVIKQLTQQGKLYNLYGPTEAT
VLITARQLQVGDSNRSLGAPIANSQVLILDENFQPVAEQTVGELYIVGPGVCLGYLNNPQ
QTAERYLQLPLPGGQSLRAYRTGDMAKWTADGIELCGRRDNQVKIRGYRVEPEEIERCLR
DSQLFRQVAVVIDSHRRILAFLAQPQEDQPGAAREALKAHAQQFLPDYMQPIAWTELANM
PFASNGKVDRRALLAMPVSVLENLQRRLPESADEAQLLELWADLLELPAGDISTDENFFN
LGGHSILLSRMLLQIREQFGRSISINRFIEVPTIARLATLVRGSVGEEVLSEKALADAFR
ELDVQPLPVSRMGDVHKVIVTGANSFVGVHIVEALLAWGASEVACLVRDGAGQSAAQRFA
ESLRENRLEHLDLTRVRVYAADITQPALGLTPEVYERLDREFGALVHNAANVNHVLDYES
LARDNVEPIFECLRLCEGRSKKIFNFVSTLSASSTIDAEGRVLEQPAAQTPPIYIKNGYN
LSKWVGERILERARERGVRVNLYRPGNISFNSLTGVCQPHKNRLMLMLKGSIQLGQVPEF
ALNFDLMPVDFLARFIAFHASRYQPEQAVFNLHNPEPLSWDAYVASFREAGREFQMVSVA
DWQQQLGRVDSDNALFGVLGFYLNGFEEDIGDISMIGHANAQAGVQQMGTHYPQKSPALL
RRGCDYLKEINFI