Protein Info for AO353_11020 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 43 to 60 (18 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details PF19346: DUF5924" amino acids 2 to 257 (256 residues), 371.1 bits, see alignment E=2.5e-115 PF11141: DUF2914" amino acids 268 to 333 (66 residues), 87.5 bits, see alignment E=3.8e-29

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfl:PFL_0101)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WUB9 at UniProt or InterPro

Protein Sequence (347 amino acids)

>AO353_11020 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MPILTHYVTRILELMKRYPGVIALGGFISGVCSFILVDRQQSLATWIATIMLVSWLWLML
ENSLTELFTKVFKREIPQPLLRYATQMIHQESLFFVLPFFFITTTWNSGQLVFTGLLGAA
ALVSITDPLYYKWLAPRRWLFLAMHTLTLFAALLTALPIILNLTTAQSFKLALGTAMLLS
FPSLASIFPIRTIRGALSVLSITLAIGCAGWLLRSWVPPATLWMTQVAISTQLQDRTPGD
SHNEVSVAQLRPDGLYAYTAINAPRGLDERIYHVWQFNGQEVDRIALDIHGGRKEGYRAW
SHKQNFPGNPAGDWQVRVLTEDGQVIGVLRFEVTDASQNGTTPSEAK