Protein Info for AO353_11005 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details PF02470: MlaD" amino acids 39 to 116 (78 residues), 57.2 bits, see alignment E=8.3e-20

Best Hits

KEGG orthology group: K02067, putative ABC transport system substrate-binding protein (inferred from 80% identity to pfs:PFLU0096)

Predicted SEED Role

"ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WHT9 at UniProt or InterPro

Protein Sequence (312 amino acids)

>AO353_11005 ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
METRAHHVLIGLFTVLVVAGALLFGLWLAKSSVDSEFKDYEVVFNEAVSGLSKGSAVQYS
GIKVGDVVSLRLDPKDPRRVLARIRLGGETPIKEDTQAKLALTGITGTSIIQLSGGTPQS
PELRGKDGNLPEIVASPSPISRLLNNSDDLISSVNLLLHSANQMMSPENVDRLGKTLENL
EQTTGSIAEQRGDLSQAMQQLASVGKQASATLEQTSALMRNANGMLNDQGKQMVGSAEQA
MKSLEQSSATINSLLTDNQDALNNGMQGLNSLAPAIRELRDTLSSLRAISRRLDSNPSGY
LLGGDKDKEFTP