Protein Info for AO353_10855 in Pseudomonas fluorescens FW300-N2E3
Annotation: cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 78% identity to pfs:PFLU0063)Predicted SEED Role
"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N9VNI6 at UniProt or InterPro
Protein Sequence (246 amino acids)
>AO353_10855 cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion (Pseudomonas fluorescens FW300-N2E3) MKRFRPGIAPTLVVLALLPLLVFLGFWQLSRGEQKRVLLASYAERRVAEPMTSELLSSTQ DPAFRRVRLHGQFDAAHSYLLDNRTRNGRPGVELLQPFHDQASGLWLLLNRGWLPWPNRR TPPVFTTPEQSLSLDAWVYVAPGATFQLHADPANANWPRLVTAIDPAKLWSELGRTGFAY ELREEAGPASYEADWPVVAMGPEKHLGYAVQWFAMALALFGLYLYFGWHNAKEKQHGSGH ESTQHV