Protein Info for AO353_10690 in Pseudomonas fluorescens FW300-N2E3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 TIGR03418: putative choline sulfate-utilization transcription factor" amino acids 8 to 298 (291 residues), 459.9 bits, see alignment E=1.4e-142 PF00126: HTH_1" amino acids 10 to 68 (59 residues), 83.6 bits, see alignment E=7.4e-28 PF03466: LysR_substrate" amino acids 92 to 297 (206 residues), 121 bits, see alignment E=4.7e-39

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfo:Pfl01_0027)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W534 at UniProt or InterPro

Protein Sequence (316 amino acids)

>AO353_10690 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MYDALGDLSLDLFRAFEAAARHRSFTAAAVELGTTQPAVSQQLKRLEEQLGTRLFDRIYR
GIELTEAGAILFEQVQVGLQSIDAGLNAISAQHQHEVLQVATDFAFAAYWLMPRLHRFHE
ANPQVDVSLVTSERSHNMLRTDIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPLLLKDRA
VPLPAHALQELPLLHLRGENSSHWFDWSGVFRTLGIATPPAPGQLRFDNYTLLIQAAIGG
QGVAIGWRHLVDNLLAQGLLCRPIAETAISSFGYYVVLPQRKRRSALIQQFVDWLMTEQA
SSAESLTGLALPSIAV