Protein Info for AO353_10580 in Pseudomonas fluorescens FW300-N2E3

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details PF05226: CHASE2" amino acids 36 to 327 (292 residues), 183.3 bits, see alignment E=6.8e-58 PF02518: HATPase_c" amino acids 658 to 765 (108 residues), 99.1 bits, see alignment E=2.1e-32

Best Hits

KEGG orthology group: None (inferred from 74% identity to pfl:PFL_0010)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VT43 at UniProt or InterPro

Protein Sequence (768 amino acids)

>AO353_10580 ATPase (Pseudomonas fluorescens FW300-N2E3)
MKPWPRKEGREPTQAQRLFHRMVREWLWVSLILLPLTALLSLNHGLTLSNLLYDNLRRLS
PLPVDPRILIVTIDDYSLQQLGQWPWSRTLHADLLDRLSAAKVKGVLFDVIFSEPDKLPD
NDLRLAHAACQAGNVFVPLLREGVARYGLPLGEIEPVAPLRLCAKGIGHINAEADADGIV
RSVYLREGPERNPRAQLAWLLYETTTEGSDTLPGSPLALTVQGWQRTNGIRIPFISANAG
FPSVPYVSVLRGEVPPELLRDRLILIGSTAPGLGDRYVTPQSASIGTTPGIEIQANILNG
LLQQRSIVVLADGWAVGLSTAIVALLLALLLFRPRRALWLTLGCMVMALVASALLLRAGW
WWSPSASLLGMLLGYLIWNWRRLSAVLAYFGWELARLDSEPKVFPERRRTPSPAGDVLQG
QIVALEQAMSRTRDTRRFIADGLEYLPVATLISDPNGRILLANRNARGLFASDLVGEDLL
RRLSEIGYPGLLEQGGPVLSTLETNEFRDTQGRSLRMDLAPLLPAEGGTAIGWLLSLTDL
SVERDAEEQRAVLLRFLSHDLRAPHSVILALLDVQYHQGTGDAQLFSQIELQVRKALSLT
ESFVQLAKAESEAYQFEPSMFAMLVLDAFDQAMSIAQLKQIELLHDLDEEAEGMVLADQS
LLTRALFNLLENAIKYSPAGSQVSVRVSCAQGWLTCEIADQGKGIAAEELPELFSQYRRF
ASSQGSEGLGLGLSMVKAVVDRHGGRIFCESQVGQGTTFSVQLPLLEE