Protein Info for AO353_10200 in Pseudomonas fluorescens FW300-N2E3

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 37 to 60 (24 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 150 to 175 (26 residues), see Phobius details amino acids 190 to 206 (17 residues), see Phobius details PF01810: LysE" amino acids 13 to 204 (192 residues), 141.3 bits, see alignment E=1.4e-45

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfl:PFL_6202)

Predicted SEED Role

"L-lysine permease" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VNA1 at UniProt or InterPro

Protein Sequence (209 amino acids)

>AO353_10200 lysine transporter LysE (Pseudomonas fluorescens FW300-N2E3)
MAELWMFFLALAVVYLLPGPDMILLLQTGARQGKAAALATAIGLAIARGCHVALAALGLA
TLFKAAPWTFEVVRLAGAAYLLWLGIQCLRSNMLPNLNANGTAAAKLAWRAAIQRGLLTN
LLNPKALLFCSVLLPQFIDPQAGPVLTQFATLGVLLVVAGLLFDSGYALIGAWLGRWLER
SPSAQRMQQWLFGSLLIGFALRLTFVQQA