Protein Info for AO353_10190 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 226 to 251 (26 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details PF01145: Band_7" amino acids 333 to 545 (213 residues), 66.9 bits, see alignment E=1.2e-22

Best Hits

KEGG orthology group: None (inferred from 77% identity to pba:PSEBR_a5618)

Predicted SEED Role

"Membrane protease subunits, stomatin/prohibitin homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VTR9 at UniProt or InterPro

Protein Sequence (657 amino acids)

>AO353_10190 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MQVDLEAEGTNVEGLPRFQQAVFHGRRLKRVGIGLASLAAAGLLLAFFVGLFAPQSIWPP
LLVSQSSALIVVVAGLQSAWWITQWRARALVEPVVVLAAEQLEPIEALGWYERLLARAGE
RWIGLLAQIGAPTLWLAGWSLLALFSLEQFWSLTLPAAALGLSASVGAALSLLLAFGLLV
CERQLTQEIPAQWPEAGQLAQLTRVAIICLVTGAFCLLFSSETAVWPVRLAVLIGLLPGL
VAAELLLRAVLSLFSPRRDLLEPTLLARSFVADMLRWPPQPLLALQHELHNRFGIDLRQI
WAFTYMRRAFLPVLSVVLFVGWLLTGIHEIPLQGRGIYERFGKPVQVFGPGLHAGLPWPL
GRVLSVENGVVHELATSVGDTPAVTVADPAEGPAPAIANRLWDASHVNDKSQVIASSSND
KQSFQIVNMDVRFVYRIGLSDQAALAATYNSTDVPTLIRSTASRILVHDFASRTLDGLLG
ADRVGLAEDIGRAVQADLQKLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGTQALIA
RERGAAAEQTNQAQLQASVAHDQALATAREVNATAQAADLRFAAERKAYAVAGRAFVLEQ
YFAQLSQGLANAKVLVLDHRLGGNSTPTIDLRSYTLPATLPTDTSPSRQPVQSGAAN