Protein Info for AO353_10035 in Pseudomonas fluorescens FW300-N2E3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF00126: HTH_1" amino acids 10 to 69 (60 residues), 66.4 bits, see alignment E=1.7e-22 PF03466: LysR_substrate" amino acids 94 to 298 (205 residues), 183.2 bits, see alignment E=4.2e-58

Best Hits

Swiss-Prot: 41% identical to CMPR_SYNP6: HTH-type transcriptional activator CmpR (cmpR) from Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)

KEGG orthology group: None (inferred from 96% identity to pfo:Pfl01_5641)

Predicted SEED Role

"LysR family transcriptional regulator PA5437" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WBB7 at UniProt or InterPro

Protein Sequence (320 amino acids)

>AO353_10035 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MRKSLMRMTLRQLQIFNEVCDLRSYSRAADEMSLTQPAVSLQIRQLEELIGQPLFDYVGK
KLYMTEAAEALQRASRDIFGRLENLDMQLSDMQGSLQGQLKLAVESSAKYFVPHLFAAFK
RQHPEVNLQLTVVNRGQVIRRLSDNRDDLVIMSMVPQDMGLEFLPFLNNPIVAVAPPDHP
LCHMGPLRLQDLEPYTLLLREPGSGTRLACEEYFKEKRVHFNQTQEVSSAEAQRECVVAG
LGVALLTRHALNLELATGGLKELPVEELPLYRSWCLVQAKAKRLSPVAHAFLGFIRSERA
QISALVERFDAKLPVLPANS