Protein Info for AO353_09720 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 TIGR01643: YD repeat (two copies)" amino acids 118 to 140 (23 residues), 18.7 bits, see alignment (E = 1.9e-07) amino acids 142 to 173 (32 residues), 28.7 bits, see alignment (E = 1.4e-10) PF05593: RHS_repeat" amino acids 121 to 157 (37 residues), 27.9 bits, see alignment 2.4e-10 amino acids 142 to 173 (32 residues), 26.9 bits, see alignment (E = 5.1e-10) PF03527: RHS" amino acids 228 to 264 (37 residues), 57.8 bits, see alignment 7.7e-20 TIGR03696: RHS repeat-associated core domain" amino acids 255 to 319 (65 residues), 64.5 bits, see alignment E=1e-21

Best Hits

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WID3 at UniProt or InterPro

Protein Sequence (346 amino acids)

>AO353_09720 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
LLAENSAAGSLHHHYDELGNLIQTQLPDGRWLNRLYYGSGHLHQINLDGQVISDFERDRL
HREVLHYDATGRIIASQDSPHGQRETFAYDAAANLLDGPQPGVGLVVHNKLLTYQDKRYR
YDAFGRLIEKRSAKRGLQRFGYDAESRLIEVRNKNGSVVRMTYDPLGRRIEKTEHDTHGY
PLGETRFTWDGLRLLQEHRHQQTSLYLYEDEGYEPLARVDGTGPLQKIRYYHNDLNGLPE
QLTEADGHNVWQATYRVWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPD
VGRFTTPDPIGLAGGNQSLSVFAEPVYLDRPLGSENLLPQNNKKRD