Protein Info for AO353_09620 in Pseudomonas fluorescens FW300-N2E3

Annotation: ClpV1 family T6SS ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 892 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 13 to 878 (866 residues), 1276.1 bits, see alignment E=0 PF13191: AAA_16" amino acids 211 to 312 (102 residues), 33.1 bits, see alignment E=3.9e-11 PF00004: AAA" amino acids 234 to 367 (134 residues), 36.4 bits, see alignment E=3.3e-12 amino acids 627 to 711 (85 residues), 27.4 bits, see alignment E=2e-09 PF17871: AAA_lid_9" amino acids 373 to 465 (93 residues), 102.9 bits, see alignment E=4.3e-33 PF07724: AAA_2" amino acids 621 to 787 (167 residues), 179.8 bits, see alignment E=2.3e-56 PF07728: AAA_5" amino acids 626 to 747 (122 residues), 36.1 bits, see alignment E=3.2e-12 PF10431: ClpB_D2-small" amino acids 794 to 868 (75 residues), 48.6 bits, see alignment E=3.3e-16

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 97% identity to pba:PSEBR_a5566)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WEM4 at UniProt or InterPro

Protein Sequence (892 amino acids)

>AO353_09620 ClpV1 family T6SS ATPase (Pseudomonas fluorescens FW300-N2E3)
MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLQDSDLHRIIRQF
NIEPARLARDLTEALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVLG
ILKTPSLRHGLLGLSAEFDKIKVEALSERFDEYVGDSPENALSASDGFNAGSVPGEASGA
MAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAG
VGKTAVVEGFALRIVAGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQAS
PKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPAL
TRRFQVVQVAEPSEDKALLMMRGVASTMEKHHQVQILDEALEASVKLSHRYIPARQLPDK
SVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREHAIGIVIGARQSNSENL
LAAERERLAELESRWAEEKTLVDELLATRATLRERVGVVDSEDGSETSHALREKLVDLQQ
RLSALQGETPLILPTVDYQAVASVVADWTGIPVGRMARNELETVLNLDQHLKKRIIGQDH
ALQMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMS
EFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFD
KGVMEDGEGRVIDFKNTLILLTTNAGTELIARVCKDPQNVPEPEEIAKALRQPLLEIFPP
ALLGRLVTIPYYPLSDEMLKAITRLQLNRIKKRVENTHKVAFDYDDEVINLIVSRCTETE
SGGRMIDTILTNSLLPDMSREFLTRMLEGKALAGVRISARDNELHYDFSDAA