Protein Info for AO353_09540 in Pseudomonas fluorescens FW300-N2E3

Annotation: type VI secretion system protein ImpM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 59 to 76 (18 residues), see Phobius details PF09867: TagF_N" amino acids 5 to 138 (134 residues), 158.2 bits, see alignment E=5.7e-51 TIGR03373: type VI secretion-associated protein, BMA_A0400 family" amino acids 5 to 138 (134 residues), 156.4 bits, see alignment E=2.3e-50

Best Hits

KEGG orthology group: K11890, type VI secretion system protein ImpM (inferred from 88% identity to pba:PSEBR_a5551)

Predicted SEED Role

"Protein phosphatase ImpM"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WB39 at UniProt or InterPro

Protein Sequence (217 amino acids)

>AO353_09540 type VI secretion system protein ImpM (Pseudomonas fluorescens FW300-N2E3)
MTTPGFYGKLASRGDFVSRGLPQSFIGPWDSWLAAGLLASQTSLGDRWLDAYLVSPLWRF
MVGAGVCGPQAAVGVVMPSIDRVGRYFPLTVAVLLDHDADPASVVGSSDVWFEQVEQLLL
STLSVEASFEAFGAGLTTLGSPACLPRTPSSRFAGLHRFDATDPKARMTALAEQACEGAS
LWWGQGSERIAPALLRCQGLPVAADFAQFLLGQEGVV