Protein Info for AO353_09520 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 18 to 43 (26 residues), see Phobius details amino acids 269 to 294 (26 residues), see Phobius details amino acids 306 to 339 (34 residues), see Phobius details amino acids 363 to 386 (24 residues), see Phobius details

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 90% identity to pba:PSEBR_a5547)

Predicted SEED Role

"ABC-type antimicrobial peptide transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WTM2 at UniProt or InterPro

Protein Sequence (398 amino acids)

>AO353_09520 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MRNTLVASLAWQDYRNDVWLSACSVLALVAVVAPLLVLFGLKFGLVSSLTERLENDPATR
EIIPLGGGRFSATFIAQLSQRSDVAFALPRTRQIAATADLTAGAATVTVEMIPTAANDPL
LGSLPVPQGLDQVLLSQTAAEKLGAKAGDWLVASVGRQVAGRGEAQRTRVQVLQVLPLEA
FARDGLFAPLTLLEAAEDYRDGRAVPAFGWPGDAVGVSEQRVYPAFRLYARSLKDVEPLR
QYFAAQNLLVSTQAQTIAQVQSLSRNLSIVFWIIAGLALAGAFAAIFAGALAAVERKRRD
LSVLRLLGFSTAALLLFVVLQALYSAGLAALLSVGLYGLAQSGLNHLFVQMPGEYASHLL
ARHYAFAIVAVLGVSAVAAACGGWRVARIQAFEGIRDV