Protein Info for AO353_09420 in Pseudomonas fluorescens FW300-N2E3

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 179 to 197 (19 residues), see Phobius details PF06996: T6SS_TssG" amino acids 20 to 320 (301 residues), 306.1 bits, see alignment E=1.5e-95 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 20 to 320 (301 residues), 320.8 bits, see alignment E=3.9e-100

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 92% identity to pst:PSPTO_5426)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WB21 at UniProt or InterPro

Protein Sequence (335 amino acids)

>AO353_09420 type VI secretion protein (Pseudomonas fluorescens FW300-N2E3)
MDATYGPSASALSGLTRGIREYSLFQAVLLVVDRLREAHPYLSEEDLYDQLEFQANPSLG
FPGSDVDRVEFFREHGQLRARLRFNLIGLVGSGSPLPAFYGEQALGDSEDGNPTRHFLDL
FHHRLQRLMLPIWRKYRYRASFQSGALDPFSSQLFALIGLGGEDIRKAQELNWKRLLPYL
GLLSLRAHSAALIEAVLRYYFKHAELTIEQCIERRVEILDEQRNCLGRANSALGEDLVLG
ESVRDRSGKFRIHIRELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQQEI
RELRIGEQNACRLGWTSWLGREHADGVVTLGSKIH