Protein Info for AO353_08975 in Pseudomonas fluorescens FW300-N2E3

Annotation: heme biosynthesis protein HemY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 42 to 62 (21 residues), see Phobius details TIGR00540: heme biosynthesis-associated TPR protein" amino acids 4 to 392 (389 residues), 384.6 bits, see alignment E=2.2e-119 PF07219: HemY_N" amino acids 27 to 133 (107 residues), 95.2 bits, see alignment E=6.5e-31

Best Hits

KEGG orthology group: K02498, HemY protein (inferred from 89% identity to pfo:Pfl01_5484)

Predicted SEED Role

"Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7GZS9 at UniProt or InterPro

Protein Sequence (412 amino acids)

>AO353_08975 heme biosynthesis protein HemY (Pseudomonas fluorescens FW300-N2E3)
MKRLYVIVFLLIAAAGALGLAIAQHSGYVLIAYKTFRYESSLWATLALVAVIWLVLWGIK
MLIELVATSSGVVNPWSNRNRSRRVQVAIEHGQLDLAEGRWASAQRHLSRAAEAERQPLL
YYLGAARAANEQGRYDESDSLLERALERQPQAELAIALSHAQLQTDRGDTDGALTTLQAM
HERHPHSVQVLRQLQRLHQQRGDWSAVIRLLPELRKDKVLPASELAELERRAWGENLTLA
ARREEDGTVGLQALNRAWQQLTSAQRQEPQLVLAYAEQLRQLGAEVEAEEVLRGALKRKY
DSHLARLYGLLRGSDPARQLHVAEGWLKDHPGDPSLLLTLGRLCLQSSLWGKARDYLESS
LRVQRNPEACAELARLLAQLGDTERSNQLFQEGLGLLDKRLLASPLPVPARA