Protein Info for AO353_08680 in Pseudomonas fluorescens FW300-N2E3

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03573: OprD" amino acids 22 to 439 (418 residues), 458.7 bits, see alignment E=9e-142

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfl:PFL_5940)

Predicted SEED Role

"Outer membrane porin, OprD family" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7GZS2 at UniProt or InterPro

Protein Sequence (441 amino acids)

>AO353_08680 porin (Pseudomonas fluorescens FW300-N2E3)
MNKSTLALAVAVGVLAQQASAAGFIEDSKATLGLRNFYINTDNRTGAGANKNEEWGQGFD
LRFISGYTQGTVKFGVDAIGLYGVRLDSSPAKSGNSSGSASGGTIFPSNGNEGAVPDFGS
LGLTGKVKISETELKIGTLQPNNPVIKYNDGRLLPQTFTGGEIKSNEIKDLTLTAGEINE
AKGRNSSNDEGLSIAGANASSNYDKGKFSNKFYYAGADYKITKDLTASYYYGELKDFYSQ
NFLGLVHNWSIGPGVLKSDLRYYRSRDNGANGNDKNFFTTGFYGDNTTKGKVDNDLYSYL
ALYSVEGHTFGAGYQYTKGDSDFPWLNQGDGSSNSTITDMQIQKFARAGERTWQARYAYD
FAKVGVPGLTAGVIYLHGNNIDTPTGSKSEWERDLSLAYVVPEGPLKNLGVAWKNAMWRT
DVATRDQDENRLIVSYSIPLL