Protein Info for AO353_08495 in Pseudomonas fluorescens FW300-N2E3

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details amino acids 39 to 40 (2 residues), see Phobius details transmembrane" amino acids 25 to 38 (14 residues), see Phobius details PF06977: SdiA-regulated" amino acids 62 to 313 (252 residues), 319.7 bits, see alignment E=1.1e-99 PF13449: Phytase-like" amino acids 126 to 199 (74 residues), 27.9 bits, see alignment E=2.2e-10

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_5383)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WE45 at UniProt or InterPro

Protein Sequence (318 amino acids)

>AO353_08495 DNA-binding protein (Pseudomonas fluorescens FW300-N2E3)
MNWCWNCRAPAASRAVFAKLQSRVLIVLFAAVVALGAVGQHYRLFERGWFNLQAWLHPAD
GQSMALNDYQVVVEAKVIDGLSADVSALTFDPVRHSLFTVTNKNSELLELSLDGRILRRV
TLIGFGDPEAVEFISADTYVIADEYQQRLIKIHLTDETEFLDAADSEQMPLGVHMSSNKG
FEGLAYDSVGKRLFVAKERDPMLIYEVQGFPHYNPEKSYAVHVVNNPKRDAGLFVRDLSS
LQYDKRSGHLLALSDESHLVLELDIDGRPLSTMSLNKGRQGLQKTVPQAEGVAMDDSGTL
YLVSEPNLFYVFKKPTLP