Protein Info for AO353_08145 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details PF05154: TM2" amino acids 14 to 60 (47 residues), 59.5 bits, see alignment E=1.5e-20 amino acids 80 to 125 (46 residues), 53.2 bits, see alignment E=1.4e-18

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfl:PFL_5835)

Predicted SEED Role

"FIG00955003: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WDY4 at UniProt or InterPro

Protein Sequence (139 amino acids)

>AO353_08145 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MNTYRQDVSHQDTHSKVIGYLLWIFGFTGSHRFYYGKPVTGTIWFFTFGLLGIGWLIDLF
LIPAMDREADLRFTAGPIEYNVAWILLTFLGVFGLHRMYQGKWLTGLLYLVTGGLFFLGV
LYDFWTLNDQISVRNAQSR