Protein Info for AO353_07140 in Pseudomonas fluorescens FW300-N2E3

Annotation: peptidase M23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF04225: OapA" amino acids 110 to 184 (75 residues), 31.9 bits, see alignment E=1.8e-11 PF19425: Csd3_N2" amino acids 200 to 320 (121 residues), 51.5 bits, see alignment E=1.5e-17 PF01551: Peptidase_M23" amino acids 333 to 429 (97 residues), 120.3 bits, see alignment E=5.1e-39

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_5099)

Predicted SEED Role

"Cell wall endopeptidase, family M23/M37"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VRP9 at UniProt or InterPro

Protein Sequence (472 amino acids)

>AO353_07140 peptidase M23 (Pseudomonas fluorescens FW300-N2E3)
MTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKKTTLSLELERPAEQLTQD
QDAADAVQATNEPVESPFAQIEDSTDDSKETAKAAPAPAVEEKKAPGHREVIVAKGDTLS
TLFEKVGLPAASVHDVLASDKQAKQFTQLKHGQKLEFELGRDGQLTNLHSKINDAESISL
SKNARGYTFNRITAKPTVRSAYVHGVINSSLSQSAARAGLSHSLTMDMASVFGYDVDFAQ
DIRQGDEFDVIYEQKVVNGKAVGNGPILSARFTNRGKTYTAVRYTNKQGNSSYYTAEGNS
MRKAFIRTPVDFARISSRFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGR
RGGYGNTVIIQHGNTYRTLYGHMQGFAKGVKTGGNVKQGQVIGYIGTTGLSTGPHLHYEF
QVNGVHVDPLGQKLPMADPIAKSERARFLQQSQPLMARMEQEKATLLASSKR