Protein Info for AO353_06165 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 290 to 307 (18 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 374 to 398 (25 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 338 (317 residues), 67.5 bits, see alignment E=5.3e-23

Best Hits

KEGG orthology group: None (inferred from 81% identity to pfo:Pfl01_0659)

Predicted SEED Role

"Integral membrane efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WFC9 at UniProt or InterPro

Protein Sequence (413 amino acids)

>AO353_06165 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MIVNTDPTPHQSTRNAQLVIAARLVSDFGAFLNMVALATYVYMLGNSAMSVGIFLASRVA
GGVFASLIGTMFYRRWGGRLPLIAFDLLRAGLLGLLLVLPVSQQVLLLPVIAFGLGLGNS
MFAIGLNSQLPHMIAGEQLLKTNAWITSASSAAMVGGSLVSGLLVAGFGFETVFALNVVT
YLLAALFIVPLRLSKPAPNAEPTHKRDEWSALRQGLCSSPVIAAMLALAMADTLGSAAHN
VGFPIISKLLTPESASTTLGLMLAVWACGKLIGARVASRLPGSENSNLERRFFFGVLLMS
SGFILMFQQQSLYGLLLFALPAGLGDGFSEVGLMSRLQREPDSLRLPIFSVLTLLQMTGF
GVGMLIAAPFYNVWAPGAVVLLFHGIPLSTLLVLRVLAIRGERARRSSPTPVP