Protein Info for AO353_06090 in Pseudomonas fluorescens FW300-N2E3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF00126: HTH_1" amino acids 17 to 76 (60 residues), 61.2 bits, see alignment E=7.6e-21 PF03466: LysR_substrate" amino acids 101 to 304 (204 residues), 94 bits, see alignment E=8.4e-31

Best Hits

Swiss-Prot: 65% identical to BAUR_PSEAE: HTH-type transcriptional activator BauR (bauR) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a679)

Predicted SEED Role

"LysR family transcriptional regulator PA0133" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W2Q9 at UniProt or InterPro

Protein Sequence (306 amino acids)

>AO353_06090 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MSSRRPDPLAQVSDFDIRLLRIFRSVVECGGFSAAESVLGIGRSAISQQMSDLEQRLGLR
LCQRGRAGFSLTEEGREVYQSALQLLSALESFRTEVNGLHQHLRGELTIGLTDNLVTLPH
MRITHALAQLKERGPDVQIQIRMIAPNEVEQGVLDGRLHVGVVPQASALSGLEYQPLYSE
RSLLYCAVGHPLFYVDDKQLDDERLNSQDAIAPTFRLPAEIQAHYQALNCTASASDREGM
AFLILTGRYIGYLPDHYASLWVQQGRLRALKPDTRFYDLSLASVTRKGRRPHLVLESFLE
SLAATR