Protein Info for AO353_06050 in Pseudomonas fluorescens FW300-N2E3

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1150 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1094 (1084 residues), 1211.8 bits, see alignment E=0 PF04257: Exonuc_V_gamma" amino acids 11 to 366 (356 residues), 335.9 bits, see alignment E=2.4e-104 PF17946: RecC_C" amino acids 839 to 1077 (239 residues), 188.1 bits, see alignment E=1.7e-59

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 86% identity to pba:PSEBR_a682)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VLA1 at UniProt or InterPro

Protein Sequence (1150 amino acids)

>AO353_06050 exodeoxyribonuclease V subunit gamma (Pseudomonas fluorescens FW300-N2E3)
MADASFLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDMGGCGIAAAIDVQLPGSFMWQLYRSVLGRDEIPAKSLLDKAPLTWRLMRLLPEL
IDQPHFEPLQRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGE
SKPLTPANCWQAELWRALLLDVGEQGMAQSRAGVHQRFIETITGLDTAPKGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKTGMPVVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSESQPLNMLNQL
QDDILELRPLNETRLLWPAVDLKQDESIRFHIAHSAQREVEILHDQLLARFSADPQLRPR
DVIVMVPDIDSYAPHIRAVFGQLEREDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVEERDLPTLHRWIEGAGVRWGMNAEQRAGLGLPDELEQNS
WRFGLRRMLLGYAVGSGHSCDGIEPYDEIGGLDAALIGPLVALLDALQIAHAELTQPASP
DQWGVRLQALMQLFFLASNEHDDYLLAQLELLRETWLETCESVGLQDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLANGWKNTD
GSKELLDAMTQEHPLQPFSARYFHEGDQLFSYAREWQLLHEQHDCVPALEVLDAYVQEEP
LSLGQLQDFLRNPVRHFFSQRLKVFFEAAEAPLADEEPFVLDALQRYSLSDSLLEAALAS
PDQPEQALHAQAKRLQDSGLLPMAGFGECLQRELIEPLPDLLQRYQQLLALWPTPQNSAL
PVTLQLQGVSLEGWLSGLHQRSDGGLLAVTTIPNSIGSIKTRKWHRLTRPWVNHLVACAS
GLSMTTGLVASDDTLLLAPIEQDAALKTLGNLLQAWQSGMRQPLPVAVKTAFAWLGQTDP
LKAEAAARKAYEGDGQTTDGERRESPALARQFADYNALIADETFVDWCDALYRPLLEAPW
RSLTSEESHS