Protein Info for AO353_06045 in Pseudomonas fluorescens FW300-N2E3

Annotation: exodeoxyribonuclease V subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1229 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 9 to 1211 (1203 residues), 1110.3 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 12 to 151 (140 residues), 77.4 bits, see alignment E=3.8e-25 amino acids 336 to 445 (110 residues), 86.9 bits, see alignment E=4.9e-28 PF13245: AAA_19" amino acids 18 to 433 (416 residues), 40.4 bits, see alignment E=7.9e-14 PF13361: UvrD_C" amino acids 704 to 841 (138 residues), 54.3 bits, see alignment E=3.8e-18 PF12705: PDDEXK_1" amino acids 987 to 1190 (204 residues), 27.4 bits, see alignment E=7.9e-10

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 68% identity to pen:PSEEN0692)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WGC8 at UniProt or InterPro

Protein Sequence (1229 amino acids)

>AO353_06045 exodeoxyribonuclease V subunit beta (Pseudomonas fluorescens FW300-N2E3)
MTAKVPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGDESAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDETPAPDSLIAELRGQFSPEQWSGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLEVDHSNLLGEVLRDYWRLFCYPMQGD
ALNWVRSHWGGPAALLSRVRGLFASERDSAEGKEPAELITECLQARRDALLELKAPWRQW
AQELREICLQGVASKSVDGRKMQARYFEPWFEKICTWAEDDGLEQLDIGTGFNRLTPDGM
AEAWKGQAPSHPGLDAMSGLKASLDALPTPDAAVLKHAAQWVGARFEEEKRRRAEMGFDD
MLLRLDAALRAEGGERLATLIREQFPVALIDEFQDTDPVQYWIFESIYRIEDNNPECGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHGMVDAVNHVFQRAEAREQ
GRGAFLFREKNGENPVPFLPVESQGRKESLQINGQAVPALNIWQLSSEQPLSGVVYRQQL
AAACASEITALLNGGQQGRAGFVRGAEDLQGLLPADIAILVRDGKEAQAVRNELSVRGVR
SVYLSDKDSVFAAQEAHDLLSWLKACAEPDVERPLRAALASITLNLSLTELERLNQDELA
WEKRVMQFREYRVIWRSQGILPMLRRLLHDFELPQALIARSDGERILTNLLHLSELLQQA
AAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPMHYHDANGQAQITLSPTPELIALADDERLAEDLRLLYVALTRAQHACW
LGVTDLKRGNNNSSVLHLSALGYLLGGGEKLVESTALKRWLEDLQQNCSALSYGEMPEAT
TERFLPPRNEATLLAPLIPKRKAAENWWIASYSALRIGDSLSAGSDEAPESPQAQKLFDD
ERLDPDAPREVLASGGDIHRFPRGPNPGTFLHGLLEWAGDEGFAADPKSIENAIARRCNR
RGWEGWINTLSDWLQHLLQAPLRIGTEQPPVVFEQLTEYRVEMEFWFASHKVDVLKLDEL
VRQYTHAGASRVVAEPVLLNGMFKGFIDLTFEHAGRYYVADYKSNWLGADDSAYTEQAME
QSMLDHRYDLQYVLYLLALHRQLKARLADYDYDRHMGGALYLFLRGTRAPGQGVYFTRPP
RELIERLDRLFQGKPEPKPEPAWEQGILL