Protein Info for AO353_05965 in Pseudomonas fluorescens FW300-N2E3

Annotation: aromatic amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 47 to 64 (18 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 282 to 309 (28 residues), see Phobius details amino acids 341 to 363 (23 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 413 to 432 (20 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details PF00324: AA_permease" amino acids 19 to 461 (443 residues), 427.5 bits, see alignment E=6.3e-132 PF13520: AA_permease_2" amino acids 23 to 451 (429 residues), 132.5 bits, see alignment E=2e-42

Best Hits

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 87% identity to pfs:PFLU5197)

Predicted SEED Role

"Aromatic amino acid transport protein AroP" in subsystem Aromatic amino acid degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WF99 at UniProt or InterPro

Protein Sequence (466 amino acids)

>AO353_05965 aromatic amino acid transporter (Pseudomonas fluorescens FW300-N2E3)
MADEQLQQGVLKRGLKNRHIQLIALGGAIGTGLFLGSAGVLKSAGPSMILGYAIAGFIAF
LIMRQLGEMIVEEPVAGSFSHFAHNYWGSFAGFLSGWNYWVLYVLVGMAELTAVGKYVQF
WWPEVPTWVSAAVFFVLVNLINTMNVKVFGEMEFWFAIIKVVAIIGMIALGCYMLVSGTG
GPQASVSNLWSHGGFFPNGTNGLLMAMAFIMFSFGGLELVGITAAEASEPRKVIPKAINQ
VVYRVLIFYVGALTVLLSLYPWDQLLQTLGASGDAYSGSPFVQIFALIGSNTAAQILNFV
VLTAALSVYNSGVYCNSRMLYGLAEQGDAPKSLMKLNKQGVPLRALGISALITMLCVVVN
YVAPNEALELLFALVVASLMINWAMISLTHLKFRKAMGQRGIVPGFKAFWSPYTNYLCLA
FMAMIIYVMLLIPGVRASVYAIPVWVLILFVFYRIRVARTRALSVA