Protein Info for AO353_05865 in Pseudomonas fluorescens FW300-N2E3

Annotation: toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1495 PF03534: SpvB" amino acids 32 to 304 (273 residues), 277.6 bits, see alignment E=1.6e-86 PF12256: TcdB_toxin_midN" amino acids 643 to 806 (164 residues), 135.8 bits, see alignment E=1.6e-43 PF12255: TcdB_toxin_midC" amino acids 854 to 1001 (148 residues), 149.7 bits, see alignment E=9e-48

Best Hits

KEGG orthology group: None (inferred from 74% identity to pba:PSEBR_a704)

Predicted SEED Role

"Putative toxin subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WRZ0 at UniProt or InterPro

Protein Sequence (1495 amino acids)

>AO353_05865 toxin (Pseudomonas fluorescens FW300-N2E3)
MNEQNALPVIAPSLPKGGGAIQSIGKGWGAVGAHGAASYELALPISPGRGFAPSLSLSYG
SSVGNSVFGIGWGMSLPTVGRRTSKGVPAYTEDDEIVGPSGVVWLPERDLQGVITSTRID
HYNDLELGETYTVTRHFPRIESSFDRIEYWSSQSDKAGFWLVHGADGSLHVFGKKPASRR
ADPQNSQRVGEWLLEESLNAHGEHILYQYKADGAKAQRYLSRVSYGNFKADAHLYLWKAD
RLRLVQWHFELVFDYGERSTAYEQKPEYDGQQWQPRSDGFSSFAYGFELRTERLCRQVLM
FHRFPDELGTDPVLVRRLLLDYRQTSLGYQHLTAAHEQAFGNATTADSRPPVEFSYSQFK
LPADAHNWQQFQDMPGLNDGQRYQLVDLYGEGLPGVLHSSENAWYYREPIRAKAKSNKVT
YDQWRALPTIPTADTAKPVRQSLSDLTGDGRLNWVIAQPGLSGVFSLGPDRNWSNFASLD
AFPTEFFHPQGQLADLMGEGLSDLTLIGPRSVRLYANQREKGFAAAREVPREEDEDALPV
LTSSPTELVAFSDILGSGQPHLVRVRHNEVKCWPNLGHGRFGKGFVLGSPKLDYETFDAS
RIRLADLDGSGAADLIYLHADHAQIFMNHCGNAFDLSVALPWPQGVRYDRFCQVSIADLQ
GLGCSSLILSVPHMTVQHWRYDFVSEKPYLLTGTNNNMGAAGSIRYRSSAQEWLDEKAER
IKAGKPRSCHLPFALHLVSSQTQLDEITGNQLTQSFSYRQGYYDGIEREFRGFGLLLQTD
SEANPGDADSQGFTTPSLKKSWYHTGQAVDLPRTGYHSADKAAVALGKALLCQYQPEIGG
DTLVTPDTATTLEMARALSGHLLRSEILGIDTRLKTRTLYSVQENRYQVRLLQVPDSSQR
YARMLPLPLESISYQYEGIADDPQCQHIFNLQHDRFGALIHNVSVHYARRKTDSDTPPFS
DADQQQWWRDAHDPAQQLYYLNETRTEFIHLDSPQGWRLGLPYRQRTHALKRPKAHASGG
LATKDMTYEKLIELIKGTDWTTQSILTGLSVQRYKNTSTAETLPDGTAHFEALADHLETA
ELDDTALKAFDVLSQATRPKGKLLERSGYHRMTDFLPASTSLKKLWSVKSGFSTYATLEG
FYKVKTLQPSTSQGVTEISHDKYGCLITAFKLPDGCITQAAYDYRSLAPRRITDPNGNIQ
EGLYDSFGQILASSFYRSEGDKLTGFKPVAQYRRPVFTRPSEAITNKEDALKDAAIAIYY
APFSWMGRASDTALKDTDWLTRCVANGDLLPSGHICASIRRRLADLETLSADEAKLKAEL
DISAREPVHIVALTADRYPDDDQRQIRIAVTCSDGFGRTLQQKLKVESGTAYVVSNTGEL
TLNGKIPQQQIAAQRWRVSERVEYNNKGLAIRTYRPYFADQHRYINDVSFRKFGHCDLQF
YDALGRPTHTRLAKQGDLSCLRRQTRHPWYTVDEDENDTLEEAMPKPLPTTGGEA