Protein Info for AO353_05855 in Pseudomonas fluorescens FW300-N2E3

Annotation: toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 transmembrane" amino acids 361 to 382 (22 residues), see Phobius details amino acids 502 to 518 (17 residues), see Phobius details PF03538: VRP1" amino acids 23 to 317 (295 residues), 184.5 bits, see alignment E=1.9e-58

Best Hits

Predicted SEED Role

"FIG00957871: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WEG0 at UniProt or InterPro

Protein Sequence (853 amino acids)

>AO353_05855 toxin (Pseudomonas fluorescens FW300-N2E3)
MDVSNGSLLHRLIDSPGNEDETKADFKTAMQRMGFESVFDIVRMTKEEFTLELARHTDAN
AEQAYGNALSYARQISRLYQEHQLSSGDASRRVRRSVGTESTSGPATYQALFNENWEQFC
KDGDIAAIDSPVAYLRALYLFAGQLEKSSTHPDKITLEKRRPDLKNLTLDHQSAFAAKPM
LSIVNDTLSSHVQEHLKKTNNTKSVHEVLACERYPLSLPYDLHHHQCLLGLGADKPALGE
LNYQVSLKLPFLLDESEYGSISKPSSEAQRLMSGLSPEQQKILIEPLDPDIEVKAYGTKV
SDPRLSVERFKELTGLTMEQIDQLLAQGKHRPKASTNSPGAGRHFYGCEYINTASARDKI
MVVATSPATFNILPVICFDVLLRMVRLQRWTGIPAAELDTLIVNAMHSDGTTSLPGLKSL
WLNPNTLRVLGVYRYLNQRYGIAPEEFASLLHDMPTSACGDRAPLFDQVFNRTQLLPNPL
LQNAGQDIDIKAPKSQPSLNYLGAGLGLTVTQDSLLLLAAQTKEHLSSLKHDLPTVSSLY
RQARIAQMFGLSPVECTEMARTLGGEAFCELLAKGKLSDPYNHSSDILDVLMAMEWAVDW
LKQNNRDVLQWCRLFSSTKDDLPFPPELERRLETFRADTTPSADHQQRLVETLLHDIADL
SAEYVPSVMAMGDTSTMAVVTEIKNFSPGKIPQSLAKVLRAAGACKGLHLNSSTLQQLMS
NPAWLASNSPGTLTPQTLYLLERFSHCARHQPQSEENLLHYLRLANEAPAKDSNGLLANL
LNWSIEEVSCLTALLGQNRARTMEEVDWIMRCQTCCKRTGLSASLLLNATALTADSSTSD
WKTVGEAVLAARH