Protein Info for AO353_05850 in Pseudomonas fluorescens FW300-N2E3

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 signal peptide" amino acids 14 to 15 (2 residues), see Phobius details transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details PF16591: HBM" amino acids 33 to 286 (254 residues), 264.5 bits, see alignment E=1.5e-82 PF00672: HAMP" amino acids 308 to 358 (51 residues), 44 bits, see alignment 3.5e-15 PF00015: MCPsignal" amino acids 422 to 605 (184 residues), 150.9 bits, see alignment E=4.9e-48

Best Hits

Swiss-Prot: 70% identical to MCPS_PSEPK: Methyl-accepting chemotaxis protein McpS (mcpS) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 85% identity to pfo:Pfl01_0728)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7GZK5 at UniProt or InterPro

Protein Sequence (639 amino acids)

>AO353_05850 chemotaxis protein (Pseudomonas fluorescens FW300-N2E3)
MNSWFANISVNLKLSLGFGLVLALTCILALTGWTSLGGLIDRSNWMSDITQLNAGLTKLR
VTRLQYMLAAGDETVAQTVQTALDGFKAQQQKLLSSLKSPENLKLLNEQGTVIDAYQQSL
NKMRSAYRTVSSVRQTMGENAESANTLINDIDTRVRQMPLSDQRFEQLLAITEAKEQFQL
ARYEVRGYIADSNPATEQKAFAQMDAAIASLKTLNTHFADSQQDALRQLQSALLNYRNAL
QAYKAANNDAVVARQEMTVQGNDIVTRSDALYQIQLDRRDAESTQARTLQLISTVLALLV
GVLAAVIITRQITRPLRETLAVVERIAGGDLTHDVHVTRRDELGVLQQGIARMGVTLREL
ISGIRDGVTQIASAAEELSAVTEETSAGVNSQKIETDQVATAMHEMTATVQEVARNAEEA
SQAAAAADGEAREGDKVVNEAIAQIERLASEVVRSTEAMTVLQQESDKIGSVMDVIKAVA
EQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVA
AVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSII
NVRDVSEQTAAASDETAASSVELARLGNQLQMMVSHFRV