Protein Info for AO353_04365 in Pseudomonas fluorescens FW300-N2E3

Annotation: recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF13495: Phage_int_SAM_4" amino acids 8 to 92 (85 residues), 27.1 bits, see alignment E=6.7e-10 PF02899: Phage_int_SAM_1" amino acids 9 to 91 (83 residues), 72.4 bits, see alignment E=4.5e-24 TIGR02225: tyrosine recombinase XerD" amino acids 10 to 297 (288 residues), 388.1 bits, see alignment E=1.3e-120 PF00589: Phage_integrase" amino acids 113 to 284 (172 residues), 183.6 bits, see alignment E=4.2e-58

Best Hits

Swiss-Prot: 88% identical to XERD_PSEPK: Tyrosine recombinase XerD (xerD) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 97% identity to pfo:Pfl01_1025)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1T4 at UniProt or InterPro

Protein Sequence (298 amino acids)

>AO353_04365 recombinase XerD (Pseudomonas fluorescens FW300-N2E3)
MPAIDHPLIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEKGLELLNAGRELILDHL
SWRLEQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLRVDMPQLGRPLPKSLSEADVE
ALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQINLRQGVLRVMGKGSKERLV
PMGEEAIVWVERYLRDGRSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKS
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPRG