Protein Info for AO353_03980 in Pseudomonas fluorescens FW300-N2E3

Annotation: thiol oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06537: DHOR" amino acids 33 to 475 (443 residues), 397.8 bits, see alignment E=7.3e-123 PF00034: Cytochrom_C" amino acids 347 to 475 (129 residues), 25.4 bits, see alignment E=2.9e-09

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_4489)

Predicted SEED Role

"Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7GZG1 at UniProt or InterPro

Protein Sequence (475 amino acids)

>AO353_03980 thiol oxidoreductase (Pseudomonas fluorescens FW300-N2E3)
MPSLPLRLSALLLALGLSACDDAPRFTKAEPGEARSGGAATVRKTDQNAFSLPSANLSPT
RRLDFSVGNSFFRSPWVIAPSTTTARDGLGPLFNTNACQNCHIKDGRGHPPTADSNNAVS
MLVRLSIPNEPAYAKLIEHMGVVPEPVYGGQLQDMAVPGVAPEGKVRVDYDPLPVRFTDG
TEIELRKPRLLITQLGYGPMHPDTLFSARVAPPMIGLGLLEAISDADILANADAQAKAKN
GIAGRPNRVWDDAQQKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPFDDCTPAQT
DCLQAPNGNGPDGEPEVSDNILRLVLFYSRNLAVPARRDVNGAQVLAGKNLFYQAGCQSC
HTPKFTTAANAAEPELANQVIRPYSDLLLHDMGEGLADNRSEFQASGRDWRTPPLWGIGL
TQAVSGHTQFLHDGRARNLLEAVLWHGGEARAAQQQVLAFNAEQRAALLAFLNSL