Protein Info for AO353_03720 in Pseudomonas fluorescens FW300-N2E3

Annotation: exonuclease I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 PF00929: RNase_T" amino acids 6 to 185 (180 residues), 80.7 bits, see alignment E=1.9e-26 PF08411: Exonuc_X-T_C" amino acids 204 to 467 (264 residues), 328.5 bits, see alignment E=2.8e-102

Best Hits

KEGG orthology group: K01141, exodeoxyribonuclease I [EC: 3.1.11.1] (inferred from 86% identity to pfo:Pfl01_4438)

Predicted SEED Role

"Exodeoxyribonuclease I (EC 3.1.11.1)" in subsystem DNA Repair Base Excision (EC 3.1.11.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WE43 at UniProt or InterPro

Protein Sequence (475 amino acids)

>AO353_03720 exonuclease I (Pseudomonas fluorescens FW300-N2E3)
VTSIFWYDYETTGISPRCDRPLQMAGIRTDLDLNEIDDPVNLYCQPSDDILPHPAACVIT
GITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPHGIVWPEEDGRVTLKLERLTAANGLDHGQAHDALSDVR
ATIALARLIRDKQPKLYDWLFKLRSKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPLA
WHPRNRNALIVCDLHLDPQGLLDQDTETLRQRLYTRREDLAEGELPVPLKLIHINRCPVV
APLSVLRAEDQQRLQLDMAQYEARALRLSDAQEVWRDKVLAIYAREDFTPIEDPEQQLYD
GFIGDRDRRLCEQVRNADPMQLAQEQWPFDDERLPELLFRYRARNFPETLSREEHERWKL
FCQQRLSDAGWGAPNTLQGFNEAMAQCSLSATAIQQQVLDEWREYVDSLRKRLDL