Protein Info for AO353_03615 in Pseudomonas fluorescens FW300-N2E3

Annotation: cold-shock protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details PF00313: CSD" amino acids 133 to 194 (62 residues), 88.8 bits, see alignment E=8.4e-30

Best Hits

KEGG orthology group: K03704, cold shock protein (beta-ribbon, CspA family) (inferred from 90% identity to pfo:Pfl01_4415)

Predicted SEED Role

"Cold shock protein CspC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WQN9 at UniProt or InterPro

Protein Sequence (200 amino acids)

>AO353_03615 cold-shock protein (Pseudomonas fluorescens FW300-N2E3)
MLKIVHLLTGAAALLLSFIPSLRTEAAPYLQQPDALYLAFFGLLNLTLAPVIPYWNKGPR
HQLQNLVSALLVLAVVVQTLTLLAPMPVIGGQPAVLLSLIVALIAVLLHLAISFYKSSPA
AATQNYDMTNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS
VMNRDKGLQAEDVIAALPRR