Protein Info for AO353_03030 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1571 transmembrane" amino acids 441 to 462 (22 residues), see Phobius details PF20178: DUF6543" amino acids 78 to 342 (265 residues), 153.9 bits, see alignment E=1.3e-48

Best Hits

Predicted SEED Role

"FIG00963434: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WEK3 at UniProt or InterPro

Protein Sequence (1571 amino acids)

>AO353_03030 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MTQHDDELAAHPDSHYQHLSTLLPTWVLQASPETRNALKNARLETPHRYRNATRLQLQTL
NALNTDHWSHRNPLEQMLSKLQNARAFAEPLLSEALKTRFGLELDVKSTFLRLYIPQTIP
WLPVKSGAARTWTVSLLDAALHNFQASETEVDAYEPASAFITEPSATGQFDTLPAIKQHI
SIAGFTRLCRELDIGGQYSAYLNDNLGVTNPLVDAVLKPSVRNAQHAALKSALHQGLLRQ
NIENATCDAILGFLEGRPGMKLDGEPLHCHDLTMMSSALTGIVIFAPNLERSRQATRIVV
YLPEDPEHPVKQYPDTLAFMTELTRKLRSPDYQRFFSQFVDHQERGHFFADLNRRLSVVT
WHQHQHGDPLPSWRETPIDKPNLRFSLNPINADLWAHLYQRQLNKILNDARTIAVSTASA
DQNARWALWDAFSKVASTILEVAAFVALPFVPFLGELTLAYMAYQLLDEAFEGIVDWAED
LQQEAFEHLMGVVESLVQLGTFAVGGVIAVGEIKPLLPRDTLALFDRLIPAKAADGKTRY
WKPDLTPYEYSVNLPTEAKPDHLGLYQHQGQTLLPLEDKLYAVRLNSETGQFALQHPSRA
DAYQPPLRHNNHGAWQTGLEQPLRWDRETVMRRLGHSVESFSSAEREQILRISGFHDNVL
RETHVENYRPPSLLTDTIKRFKIERDIQALIEQTSNDQPEHYQALNQRKSLFESRYRELE
KTDDQQVQLLLGTVQNLPTDIAQELLSNATGTELMSLHNGRVPQRLKDVALKAMEAVRVA
RAYEGFYLEDMESADTHRLALHSLESLPGWPERLRIEVRDYSHDGTLRDSIGQADAPILR
TLVLADDFTYQVHENKKPSGDFYHAILLALPDADRTALGFTLEDGEALKQRIAEHAADQP
TLRTLLAKHPHRKPFYDPTTMRLPGGTQGYSRNNRTTPTLNDRVREVYPSLSAEELEPMV
LALQRHPDGARVELSRLANELEQLHRDLGIWVTDTPTVHPEIRVALSDLEQQVAQHNRRL
LAQEIQRSWRRQSDRDFDAPDGTGRYVLRFAEPILGDLPTLTADFSHVSLLSLEGSRAAH
GVHGFLQNFKGLHRLDLRRFSLTTLPDAITRMPNLDALVLSDCGIQLDAVTWSKLSSLNK
LVMLDLFNNPLSAVPSVESMPELVHLDLSHTGLTDIPAGIMHHPKLDTARLSGNSISELP
RELFDSPAYQKHSVFLTHNPLSENARQRIKRHYVDSLFDLGVSAPEADIERVRALYPNLE
VEQASDFVYELPGTLKDGRLELASLEAELSRLSTDLSAWTADLPARHPLTGEPFDAQQQL
IEHSSRDEFKQLLEQCWRHETDLDDFNEALEPTFELIIPLLINGELPTLSADFSHVTSLE
ILSADGITRIGGFLESFPKLKSLRLRDCNLGNIPDAVFKMGQLRSLSFPECRISLSAKSV
SALAGMEQLDYLDLARNPLGRTPDLSQMTGLATVLLNETGITEIPHGLLQMTELDWADLS
DNAITEVPSDVLELPVELAENITLRGNRFSEESLLRLIGFFERTGTDFGVQEVIDRGEME
ISSTDGTEIDE