Protein Info for AO353_02855 in Pseudomonas fluorescens FW300-N2E3

Annotation: flagellar basal-body rod protein FlgC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 TIGR01395: flagellar basal-body rod protein FlgC" amino acids 5 to 147 (143 residues), 167.8 bits, see alignment E=7.9e-54 PF00460: Flg_bb_rod" amino acids 7 to 34 (28 residues), 33.4 bits, see alignment 3.6e-12 PF06429: Flg_bbr_C" amino acids 94 to 145 (52 residues), 58.7 bits, see alignment E=4.7e-20

Best Hits

KEGG orthology group: K02388, flagellar basal-body rod protein FlgC (inferred from 99% identity to pfo:Pfl01_4250)

Predicted SEED Role

"Flagellar basal-body rod protein FlgC" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VPH3 at UniProt or InterPro

Protein Sequence (147 amino acids)

>AO353_02855 flagellar basal-body rod protein FlgC (Pseudomonas fluorescens FW300-N2E3)
MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG
SNSLFQNQDAAGQGVQVLGVVEDQSNLEARYEPNHPAADAKGYVYYPNVNVVEEMADMIS
ASRSFQTNAEMMNTAKTMMQKVLTLGQ