Protein Info for AO353_02580 in Pseudomonas fluorescens FW300-N2E3

Annotation: Long-chain fatty acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03349: Toluene_X" amino acids 14 to 423 (410 residues), 384 bits, see alignment E=7.3e-119

Best Hits

KEGG orthology group: K06076, long-chain fatty acid transport protein (inferred from 81% identity to pba:PSEBR_a4232)

Predicted SEED Role

"Long-chain fatty acid transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WQ22 at UniProt or InterPro

Protein Sequence (423 amino acids)

>AO353_02580 Long-chain fatty acid transport protein (Pseudomonas fluorescens FW300-N2E3)
MKKVMLKTTLSLAVALASTQIFASGFALNEQSISGMGTGFAGRSSSAEDASTVFGNPAGM
SRIKRQEVTGGLAAIDASSDIKDAHGAHPGTNKGDMVPFTAVPMGYYVKPIDDHWAFGLG
VYAPFGLITNYESGFQGGGFGSKSEVKVVTFQPTVSYAFNDRVSIGFGPTINRIGGTLES
DVPLFGDTHVKIKGDDTALGYNFGVLVQATDTTRLGLTYHSKVNYKLEGHTDITAGANAP
SAFLQSNRYDASLKIETPESVDFSVTQQLTDAWTLYAGSTWTRWSRLKNITVNNEGVTAA
QGGVLSPALFGTITEEQNWHNTWAYAIGTSYKLNKQWVLRTGLTFDQSPTNNTDRSPRIP
TGDRTIFSLGAGYNVTDDLTIDVAYSYLKEEAVTVNHSNAVDSYSAKYENSSNGFGVGAT
YRF