Protein Info for AO353_02470 in Pseudomonas fluorescens FW300-N2E3

Annotation: Cro/Cl family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 PF13560: HTH_31" amino acids 56 to 96 (41 residues), 32.9 bits, see alignment E=9.7e-12 PF01381: HTH_3" amino acids 57 to 94 (38 residues), 34.2 bits, see alignment E=3.3e-12 PF12844: HTH_19" amino acids 57 to 101 (45 residues), 32.1 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 89% identity to pba:PSEBR_a4213)

Predicted SEED Role

"Transcriptional regulator, Cro/CI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNH1 at UniProt or InterPro

Protein Sequence (113 amino acids)

>AO353_02470 Cro/Cl family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MDIQIIARDGEPEYAVLTWAQYQALLKAAGVTEQPPREATVRHAATADQVLPGLDQLRSL
REGKGIAIEALARTVGISPSYLALIESGERQPDAAIRRSLAWELTVPGWRDES