Protein Info for AO353_02375 in Pseudomonas fluorescens FW300-N2E3

Annotation: septum site-determining protein MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR01968: septum site-determining protein MinD" amino acids 2 to 267 (266 residues), 381.2 bits, see alignment E=1.2e-118 PF10609: ParA" amino acids 3 to 245 (243 residues), 49.5 bits, see alignment E=1.2e-16 PF13614: AAA_31" amino acids 3 to 156 (154 residues), 62.4 bits, see alignment E=1.7e-20 PF06564: CBP_BcsQ" amino acids 3 to 148 (146 residues), 24.7 bits, see alignment E=4.8e-09 PF09140: MipZ" amino acids 4 to 142 (139 residues), 34 bits, see alignment E=6.2e-12 PF01656: CbiA" amino acids 5 to 226 (222 residues), 69.2 bits, see alignment E=9.7e-23 PF02374: ArsA_ATPase" amino acids 6 to 40 (35 residues), 31 bits, see alignment 4.6e-11

Best Hits

Swiss-Prot: 76% identical to MIND_ECO57: Septum site-determining protein MinD (minD) from Escherichia coli O157:H7

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 97% identity to pfl:PFL_4380)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WCE0 at UniProt or InterPro

Protein Sequence (270 amino acids)

>AO353_02375 septum site-determining protein MinD (Pseudomonas fluorescens FW300-N2E3)
LAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDF
VNVVNGEANLQQALIKDKRLENLYVLAASQTRDKDALTVEGVEKVLMALKEDFEFVVCDS
PAGIEKGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAENGEDPIKEHLLLT
RYNPERVSNGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSD
AVDRLLGKTVQHRFLDVEKKGFFERLFGGR