Protein Info for AO353_02005 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 115 to 140 (26 residues), see Phobius details amino acids 150 to 175 (26 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details PF01061: ABC2_membrane" amino acids 18 to 227 (210 residues), 89.7 bits, see alignment E=9.8e-30

Best Hits

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 54% identity to dae:Dtox_4137)

Predicted SEED Role

"O-antigen export system permease protein RfbD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7GZB5 at UniProt or InterPro

Protein Sequence (269 amino acids)

>AO353_02005 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MIRTLAFGARSFIKSRELIWQLVRREVSLRYSGSFLGIVWSFINPLAMLMVYSFVFGTVF
KARWGGVATESQDYTILLFVGMLIHGLFAECLGKSATLIVANSNYVKKVIFPLEILPWTI
IGAALFHFFTGLIVLIALQLVLTGDLQWTLVYLPLLLIPFILFLVGLSWFVSALGVFFRD
IAQLVGMITAVMMFLSPVFYSVESIPERFRPYMMANPLTLVIEQSRRVLIYGLQPDSQAL
LILSLVGIFTCGAGLWFFNKTRKGFSDVL