Protein Info for AO353_01040 in Pseudomonas fluorescens FW300-N2E3

Annotation: polyhydroxyalkanoate synthesis regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 TIGR01848: polyhydroxyalkanoate synthesis repressor PhaR" amino acids 10 to 111 (102 residues), 129 bits, see alignment E=4.8e-42 PF07879: PHB_acc_N" amino acids 11 to 70 (60 residues), 95.7 bits, see alignment E=1.4e-31 PF05233: PHB_acc" amino acids 75 to 111 (37 residues), 32.3 bits, see alignment 8.7e-12 amino acids 116 to 151 (36 residues), 27.8 bits, see alignment 2.2e-10

Best Hits

KEGG orthology group: None (inferred from 72% identity to avn:Avin_23680)

Predicted SEED Role

"PhbF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WBQ2 at UniProt or InterPro

Protein Sequence (177 amino acids)

>AO353_01040 polyhydroxyalkanoate synthesis regulator (Pseudomonas fluorescens FW300-N2E3)
MTDNSRNTTRLIKKYPNRRLYDTHTSSHLTLADIRQLVVDKIPFEVVDAKTGEDLTRSIL
LQVILEAESGGEPIFSSEMLMGIIQFYGPYQSVLGSYLDKSIQTVIDIQSQTGAQSSEAW
SEFMHQQAPVMQDLMRQYVDQSKALYLNTQNLFGLFGGMPPGKPGGGGGTKKNGDGE