Protein Info for AO353_00720 in Pseudomonas fluorescens FW300-N2E3

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1153 (1152 residues), 1199.1 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1146 (1144 residues), 227.1 bits, see alignment E=3.7e-71 PF13476: AAA_23" amino acids 6 to 233 (228 residues), 76.1 bits, see alignment E=1.2e-24 PF13304: AAA_21" amino acids 27 to 217 (191 residues), 31.3 bits, see alignment E=4.1e-11 PF06470: SMC_hinge" amino acids 524 to 614 (91 residues), 34 bits, see alignment 6.9e-12

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 94% identity to pba:PSEBR_a1705)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W9N3 at UniProt or InterPro

Protein Sequence (1162 amino acids)

>AO353_00720 chromosome segregation protein SMC (Pseudomonas fluorescens FW300-N2E3)
VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES
MTDVIFNGSTSRKPVSQASIELVFDNSDGTLIGEYAAYAEISIRRKVTRDSQTTYYLNGT
KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRET
ENRIRRTHENLARLTDLRDELERQLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQEL
NEQVGQREAIIGNQEISFEALVAEQRNADASIERLRDGHHDLSERFNLVQGRFYSVGGDI
ARVEQSIQHGQQRLRQLQDDLKEAERSRLETESHLGHDRTLLATLGEELDMLTPEQEVTS
AAAEEAAAALEESETTMHGWQEQWDSFNLRSAEPRRQAEVQQSRIQQLETSMERLAERQR
RLAEERDLLSAAPEDAAILDLSEQLAASEATLEDLQASEEAQVERLEQLRQELQLALQNQ
QQAQGDLQRLNGRLASLEALQQAALDPGTGAAEWLREQHLAERPRLAEGLKVEAGWELAV
ETVLGADLQAVLVDDFAGFDLSGFAQGDLRLLSPASDGVRIPGSLLDKVEAQIDLSPWLG
QVKPVDSLEQALSLRGQLSVGESLISRDGYWVGRHFLRVRRASEAESGMLARGQEIQRLG
LEREEREATVETLETTLQNLRAQQRQQENGREHLRRLLQDEARQQGELKAQLSAGKAKAE
QLTLRRTRLDEELGELAEQRALEHEQIGESRLQLQEALDSMAIDTEQRELLLAQRDSLRE
RLDRVRQEARQHKDHAHQLAVRLGSLKAQHDSTRQALERLELQSERLTEKREQLSLNLEE
GEAPLEELRLKLEELLDKRMSVDEELRTAQIALEDADRELRDAEKRRSQAEQQSQLIRGQ
LEQQRMEWQALTVRRKTLQDQLLEDGYDLQGVLATLVAEANEKDAEEELERIAARIQRLG
AINLAAIDEYQQQSERKRYLDAQDADLVEALDTLENVIRKIDKETRNRFKDTFDQINGGL
QALFPKVFGGGNAYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAI
FKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTM
HEPGCSRLVAVDVEEAMAMVDA