Protein Info for AO353_00520 in Pseudomonas fluorescens FW300-N2E3

Annotation: universal stress protein UspA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF00582: Usp" amino acids 3 to 141 (139 residues), 117.3 bits, see alignment E=4.1e-38

Best Hits

KEGG orthology group: K06149, universal stress protein A (inferred from 96% identity to pfl:PFL_1938)

Predicted SEED Role

"Universal stress protein family COG0589" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VIE8 at UniProt or InterPro

Protein Sequence (145 amino acids)

>AO353_00520 universal stress protein UspA (Pseudomonas fluorescens FW300-N2E3)
MPYHHILVAVDLTEECDPVIHRARELSVSNGAKLSLVHIVEPMAMAFGGDVPMDLSQLQQ
QQFDQAKERLERLINKYPELSKEYSHLTYGQPRQEIHHMAKEQECDLIVVGSHGRHGLAL
LLGSTANDVLHGAPCDVLAVRLIKS