Protein Info for AO353_00075 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 54 to 78 (25 residues), see Phobius details amino acids 90 to 123 (34 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 169 to 186 (18 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 77% identity to pfo:Pfl01_2069)

Predicted SEED Role

"FIG00956589: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VN02 at UniProt or InterPro

Protein Sequence (270 amino acids)

>AO353_00075 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
VLLLKLSLIPGFLLLISLAGKRWGPSVAGWLSGLPVVVGPILFFLAVEQGPVFVTQAATA
ALSAMFAMIAFCVVYAQAAQKFNWPAALSIALLSWATAAVVLSLIPASLVFSTLAAITAL
LAAPYLFPHVQPLVSGPAPKSDKLLLRMLAGALLTLAVTLLASTVGERWSGLLAVFPVLG
SVMAVFSQQTRGPAFTAALLRATATGMYSFAAFCLTLALALPRWGWSAFVLGVAVSLGML
LITKRLAAPSHGNARQMPEVTIEPSDPQPR