Protein Info for AO353_00025 in Pseudomonas fluorescens FW300-N2E3

Annotation: phenazine biosynthesis protein PhzF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 3 to 278 (276 residues), 156.3 bits, see alignment E=5.9e-50 PF02567: PhzC-PhzF" amino acids 9 to 258 (250 residues), 173.6 bits, see alignment E=3.4e-55

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 74% identity to pfs:PFLU2146)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WBB6 at UniProt or InterPro

Protein Sequence (280 amino acids)

>AO353_00025 phenazine biosynthesis protein PhzF (Pseudomonas fluorescens FW300-N2E3)
MPRYDFKQVDVFSRVALKGNPLAVVLGADELSDERMAAFATWTNLSETTFLLEPGDSRAD
YRVRIFTTLQELPFAGHPTLGSCHAWLEAGGIPKGEEIIQECGVGLVRIRRRGTDLAFLA
PPLLKSGPLDVALVERVRLGLGLEAGAIIRAQWVDNGAGWLAVMLAEREQVLALQPDHSQ
MLGLAIGVIAPWHSERDGDEAQFEVRAFISGDGMPEDPATGSLNAGVAQWLLAEGLAPEV
YVVSQGLTMGRAGRIRVERIGADIWIGGSVVTCIDGSLNL