Protein Info for ABZR87_RS23570 in Ralstonia sp. UNC404CL21Col

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 805 PF08447: PAS_3" amino acids 49 to 128 (80 residues), 32.9 bits, see alignment E=3e-11 TIGR00229: PAS domain S-box protein" amino acids 145 to 268 (124 residues), 55.5 bits, see alignment E=3e-19 amino acids 275 to 397 (123 residues), 39.3 bits, see alignment E=3.2e-14 PF13596: PAS_10" amino acids 150 to 260 (111 residues), 23.7 bits, see alignment E=2.6e-08 PF00989: PAS" amino acids 153 to 259 (107 residues), 38.4 bits, see alignment E=5e-13 amino acids 275 to 368 (94 residues), 29 bits, see alignment E=4e-10 PF08448: PAS_4" amino acids 155 to 263 (109 residues), 68.3 bits, see alignment E=2.9e-22 amino acids 280 to 392 (113 residues), 63 bits, see alignment E=1.4e-20 PF13426: PAS_9" amino acids 162 to 261 (100 residues), 33 bits, see alignment E=2.7e-11 PF00512: HisKA" amino acids 418 to 483 (66 residues), 45.3 bits, see alignment E=3.4e-15 PF02518: HATPase_c" amino acids 531 to 643 (113 residues), 102.6 bits, see alignment E=7.8e-33 PF00072: Response_reg" amino acids 670 to 794 (125 residues), 60.7 bits, see alignment E=6.7e-20

Best Hits

KEGG orthology group: None (inferred from 78% identity to rpi:Rpic_3777)

Predicted SEED Role

"FIG00975311: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (805 amino acids)

>ABZR87_RS23570 PAS domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSESVTGWSAPVRAARETRTALAATKQVDVFWVDDPLTGTRLHVSAGAQTWGVRADALCG
VRDRWLAHVHPDDHVALRAAWDALAQGQAFAIEYRLLGSDHGEVREYRVRERGYLMPPLD
GVPAHAVGLVEDVTQGQQTLAALAESEFQLQWLTESVPFPLVQIDPEHRVRFANRAYAQR
FGFGSEDVLGRHLRELMGEAAYARVLSHLNDAFSGQRVEFEMELPYPASVGRRFVHAAYS
PQRGPDGRVQALVCVVEDITERKDAEHERFRHQREFVTLVENAPDVIARLDRELRCVYVN
RAVTEAFGVTPAVMIGKTLAASPLSADVAHPLEDAARRAFAAGEEQTLALHLEVQAGRPR
IAHYNARVIPEADRSGVTESALLIVYDVTERTEAERERDALLLREQAARAQAEAAALARD
QFLAVVSHELRSPLNGIQNWAYVLESQVAGGAPLMQRALAGIKTGVEQQVRLIEDLLDAT
RVMSGKLRLTREPFVLRTALEGALNSVHALAADRRITLHTTIDVNEHEIDGDADRVEQIV
WNLLTNAIKFTQEGGDVWLSADLLGEVARIVVRDNGRGIAPAFLPYLFDPFRQADGAHTR
RTGGLGLGLALVKRLTELHGGRVYARSEGDQHGATFTVYLPLHAGADLITPLAEDPERTG
PLPSLAGLRVLLVDDQQDARDALATLLTQVGAEVGSVGSGHETMALLDVWAARGEAGRPQ
AVVCDIALPDEDGYAILQRIRAWEHEHLPAGAAPMVAIALTAFAQPHDRARALATGFQEH
LIKPVSPYDLVRTLRTLAMSVSTAS