Protein Info for ABZR87_RS23010 in Ralstonia sp. UNC404CL21Col

Annotation: glycosyltransferase family A protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 268 to 285 (18 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 19 to 241 (223 residues), 84.4 bits, see alignment E=2.2e-27 PF00535: Glycos_transf_2" amino acids 22 to 189 (168 residues), 94 bits, see alignment E=2e-30 PF13632: Glyco_trans_2_3" amino acids 106 to 303 (198 residues), 46.1 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 84% identity to rpf:Rpic12D_3808)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>ABZR87_RS23010 glycosyltransferase family A protein (Ralstonia sp. UNC404CL21Col)
MNQPMPFDVSSVTPVQGAPAMSVVIATWRRPQMLQRCLDGLRAQTFDAHQLELVVADDGP
DDATRAVVDGFAAASPGWRVQYVPVRETQGPAAARNRGWRAATGDIIAFTDDDTIPAPTW
LAEGWRVMTTADSAAGAAENGGPPDAATGAVRMPLPERPTDYERDASGLTRAEFVTANCF
VRRAMLERVGGFDERFRLAWREDSDLQFRILDAGGRIVQAPRAFMHHPVRPAPWGVSVSQ
QRKVFYDALLYKKHPRLYRTRIRPVPPWHYYGVGAAVVVAVAALAAHLPWVAAAAAVVWL
ALTLRFTAMRLRGTAHTARHVLEMFWTSIAIPPLALYWRLRGAWHFRVWFL