Protein Info for ABZR87_RS22460 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 134.8 bits, see alignment E=5.1e-43 PF08402: TOBE_2" amino acids 275 to 346 (72 residues), 48.4 bits, see alignment E=1.3e-16

Best Hits

Swiss-Prot: 47% identical to POTA_RUBXD: Spermidine/putrescine import ATP-binding protein PotA (potA) from Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>ABZR87_RS22460 ABC transporter ATP-binding protein (Ralstonia sp. UNC404CL21Col)
MSFLRLNHVSKQYGDLRVVQDFNLNVHKGEFVSLLGPSGCGKTTTLQMIAGFAEVTEGSI
ELDGKDITRAKANARGLGIVFQTYALFPHMTVRENVEFGLEMRKCPAAERRERALQTLAL
VHLDKHIDRYPRELSGGQRQRVALARALVIKPPVLLLDEPLSNLDAKLREEMQFELREIQ
RKVGTTTIMVTHDQAEAMSISDRVVVMEAGRITQVDTPLAVYEHPRNAFISTFVGKANLL
HAAVVSGADGERRATVGAVQLALPPGTPLGNKVVLALRPEKMTCNADGTGRCEGRVTERF
FLGNQWMYTVDTPLGAMLVSAVNDGDAPREVGQTVGVDWEDRYVRVIGTEGTAA