Protein Info for ABZR87_RS22340 in Ralstonia sp. UNC404CL21Col

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 67 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 37 to 61 (25 residues), see Phobius details

Best Hits

Swiss-Prot: 45% identical to OSMB_SALTY: Osmotically-inducible lipoprotein B (osmB) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K04062, osmotically inducible lipoprotein OsmB (inferred from 96% identity to rpf:Rpic12D_3723)

Predicted SEED Role

"PUTATIVE OSMOTICALLY INDUCIBLE LIPOPROTEIN B2 TRANSMEMBRANE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (67 amino acids)

>ABZR87_RS22340 hypothetical protein (Ralstonia sp. UNC404CL21Col)
MVRVLTILLAGATLLSATGCADMTARQRNTAIGAGVGGLAGAALIGGPGATLGGAALGGL
VGNVSTR