Protein Info for ABZR87_RS22210 in Ralstonia sp. UNC404CL21Col

Annotation: flagellar type III secretion system pore protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 48 to 78 (31 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 187 to 210 (24 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details TIGR01103: flagellar biosynthetic protein FliP" amino acids 51 to 247 (197 residues), 289.4 bits, see alignment E=7.1e-91 PF00813: FliP" amino acids 52 to 243 (192 residues), 267.7 bits, see alignment E=3.3e-84

Best Hits

Swiss-Prot: 67% identical to FLIP_PECCC: Flagellar biosynthetic protein FliP (fliP) from Pectobacterium carotovorum subsp. carotovorum

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 96% identity to rpi:Rpic_4757)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>ABZR87_RS22210 flagellar type III secretion system pore protein FliP (Ralstonia sp. UNC404CL21Col)
MNVRTFLRCLIALALLGAAPAVFAQAQPGLPLLTGTAGGQSYSLPVQTLVFLTSLGFLPA
IILMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPL
RDNKITVEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMPAIASPEQTPMRALIPAFVT
SELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLL
GSLAQSFVQ