Protein Info for ABZR87_RS21920 in Ralstonia sp. UNC404CL21Col

Annotation: DUF1345 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 120 to 143 (24 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details PF07077: DUF1345" amino acids 42 to 213 (172 residues), 207.8 bits, see alignment E=5e-66

Best Hits

KEGG orthology group: None (inferred from 80% identity to rpi:Rpic_4720)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (223 amino acids)

>ABZR87_RS21920 DUF1345 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MNPQDKSSEISQLSRFAATRPRLLSAFALGAVAVAVVPAHGWLARLLLGWDIAVWAYLIL
ITVMMLRADPHRIRAVARREDERASAVLAVVCLGVVASMVAIAFELATAKSAGHAQTSHY
VFTGITVLGAWLMVPMMFTVHYAHLYYRAPHEPPLRFPDDQLEPDYWDFLYFSFTIAVAS
QTADVSIRSGAMRRAVLGQSLLSFFFNTSILALSINIAAGLFS