Protein Info for ABZR87_RS21900 in Ralstonia sp. UNC404CL21Col

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 57 (23 residues), see Phobius details amino acids 61 to 62 (2 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details PF01810: LysE" amino acids 14 to 204 (191 residues), 115.4 bits, see alignment E=1.2e-37

Best Hits

KEGG orthology group: None (inferred from 76% identity to rsl:RPSI07_mp0398)

Predicted SEED Role

"Threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>ABZR87_RS21900 LysE family transporter (Ralstonia sp. UNC404CL21Col)
MTELLAVAVITILAVISPGADFAMVTRNSLLHGRRAGVLCALGIALGVQVHVFYTMFGVG
LLIAHAPTLLHGIKLVGAAYLVWIGWKTLSAKPLPSGETASDSVGTPTLSTLAALRMGFL
TNALNPKTTLFVVSTYTQVVHASTPLLAQFGYGVFMSAAHAVWFALVAAVFASGALRRSL
LARQRIVDGVIGVILIGLGLALGLARLA