Protein Info for ABZR87_RS21830 in Ralstonia sp. UNC404CL21Col
Annotation: SRPBCC family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 87% identity to rpi:Rpic_4711)Predicted SEED Role
"Probable glutathione S-transferase-related transmembrane protein (EC 2.5.1.18)" (EC 2.5.1.18)
MetaCyc Pathways
- 4-hydroxy-2-nonenal detoxification (1/4 steps found)
- glutathione-mediated detoxification I (3/8 steps found)
- pentachlorophenol degradation (3/10 steps found)
- glutathione-mediated detoxification II (2/9 steps found)
- gliotoxin biosynthesis (1/9 steps found)
- indole glucosinolate activation (intact plant cell) (3/12 steps found)
- camalexin biosynthesis (2/12 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.5.1.18
Use Curated BLAST to search for 2.5.1.18
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (320 amino acids)
>ABZR87_RS21830 SRPBCC family protein (Ralstonia sp. UNC404CL21Col) MTTTIDSPAGTTLRPLVISRTFPVSRDWVFKAWSTADHIKRWFCPTHFTVPDATVEFRVG GKFDVCMRSPEGQDHWSRGHFLEIVPNARLVIDMNVVDGDNRPLMNAHTVVTFAEETGGG TRMEVTQTHTPLAPIAEMMIKGASEGWKQTLDKLEREAASVPVADGIQRSVVHATFTVER TYDAPRSRVFKALTDPAAKAKWFAGGNGYTLLVREMDATPGGREVVKGRWDSGVVSSFEA LYHDVIPNERVVYSYVMHLDDRKISASLATLELREPKDGSGGTHLVMTEQGAFLDGYDDS GSRERGTQFLLDMLGNSLKD